{
  "_id": "6ad3180690c8bbdf41a50f87",
  "Package": "FuzzyQ",
  "Version": "0.1.0",
  "Date": "2020-12-10",
  "Title": "Fuzzy Quantification of Common and Rare Species",
  "Authors@R": "c(person(\"Juan A.\", \"Balbuena\", role = c(\"aut\", \"cre\", \"cph\"), email = \"j.a.balbuena@uv.es\", comment = c(ORCID = \"0000-0003-4006-1353\")),\nperson(\"Clara\", \"Monlleó-Borrull\", role = c(\"aut\", \"cph\")),\nperson(\"Cristina\", \"Llopis-Belenguer\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0001-7672-0088\")),\nperson(\"Isabel\", \"Blasco-Costa\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0002-5001-5986\")),\nperson(\"Volodimir\", \"Saraveeb\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-4724-3141\")),\nperson(\"Serge\", \"Morand\", role = c(\"aut\", \"cph\"), comment = c(ORCID = \"0000-0003-3986-7659\"))\n)",
  "Description": "Fuzzy clustering of species in an ecological community as\ncommon or rare based on their abundance and occupancy. It also\nincludes functions to compute confidence intervals of\nclassification metrics and plot results. See Balbuena et al.\n(2020, <doi:10.1101/2020.08.12.247502>).",
  "License": "GPL-3",
  "URL": "https://ligophorus.github.io/FuzzyQ/",
  "Encoding": "UTF-8",
  "NeedsCompilation": "no",
  "LazyData": "true",
  "RoxygenNote": "7.1.1.9000",
  "Repository": "https://ligophorus.r-universe.dev",
  "Date/Publication": "2021-05-31 10:10:36 UTC",
  "RemoteUrl": "https://github.com/ligophorus/fuzzyq",
  "RemoteRef": "HEAD",
  "RemoteSha": "7bd4276506d71bcd118995dfedce101e8b53ae3b",
  "Packaged": {
    "Date": "2026-10-17 06:34:21 UTC",
    "User": "root"
  },
  "Author": "Juan A. Balbuena [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0003-4006-1353>),\nClara Monlleó-Borrull [aut, cph],\nCristina Llopis-Belenguer [aut, cph] (ORCID:\n<https://orcid.org/0000-0001-7672-0088>),\nIsabel Blasco-Costa [aut, cph] (ORCID:\n<https://orcid.org/0000-0002-5001-5986>),\nVolodimir Saraveeb [aut, cph] (ORCID:\n<https://orcid.org/0000-0003-4724-3141>),\nSerge Morand [aut, cph] (ORCID:\n<https://orcid.org/0000-0003-3986-7659>)",
  "Maintainer": "Juan A. Balbuena <j.a.balbuena@uv.es>",
  "_user": "ligophorus",
  "_type": "src",
  "_file": "FuzzyQ_0.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/d15908c8843525459c445dbd6af66d3607a6a54b5b4fba839323d645b1dbd29e",
  "_filesize": 1103268,
  "_sha256": "d15908c8843525459c445dbd6af66d3607a6a54b5b4fba839323d645b1dbd29e",
  "_expires": "2027-01-25T06:39:00.000Z",
  "_created": "2026-10-17T06:34:21.000Z",
  "_published": "2026-10-17T06:39:02.218Z",
  "_buildurl": "https://github.com/r-universe/ligophorus/actions/runs/39010265969",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 117331617104,
      "time": 88,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12092463358"
    },
    {
      "job": 117331617217,
      "time": 93,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12092971164"
    },
    {
      "job": 117331617056,
      "time": 85,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12093170591"
    },
    {
      "job": 117331617006,
      "time": 88,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12092289672"
    },
    {
      "job": 117331198618,
      "time": 133,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12093010760"
    },
    {
      "job": 117331617077,
      "time": 73,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12092996023"
    },
    {
      "job": 117331617145,
      "time": 63,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12093125426"
    },
    {
      "job": 117331617144,
      "time": 58,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12092427324"
    },
    {
      "job": 117331617152,
      "time": 74,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12092896388"
    }
  ],
  "_upstream": "https://github.com/ligophorus/fuzzyq",
  "_commit": {
    "id": "7bd4276506d71bcd118995dfedce101e8b53ae3b",
    "author": "Juan Antonio Balbuena <balbuena.ja@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update index.html",
    "time": 1622455836
  },
  "_maintainer": {
    "name": "Juan A. Balbuena",
    "email": "j.a.balbuena@uv.es",
    "login": "ligophorus",
    "bluesky": "@jabalbuena.bsky.social",
    "orcid": "0000-0003-4006-1353",
    "description": "Zoologist. Marine parasites, community ecology,  symbiosis, cophylogeny & coevolution. ",
    "uuid": 22170335
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "cluster",
      "role": "Imports"
    }
  ],
  "_owner": "ligophorus",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "ligophorus",
      "count": 134,
      "uuid": 22170335
    }
  ],
  "_userbio": {
    "uuid": 22170335,
    "type": "user",
    "name": "Juan Antonio Balbuena",
    "followers": 11,
    "description": "Zoologist. Marine parasites, community ecology,  symbiosis, cophylogeny & coevolution. "
  },
  "_downloads": {
    "count": 302,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/FuzzyQ"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/ligophorus/fuzzyq",
  "_searchresults": 7,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/FuzzyQ.html",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/ligophorus/fuzzyq",
  "_realowner": "ligophorus",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2021-01-05"
    }
  ],
  "_exports": [
    "AOplot",
    "fuzzyq",
    "fuzzyqBoot",
    "fuzzyqCI",
    "sortClus"
  ],
  "_datasets": [
    {
      "name": "antsA",
      "title": "Ant species abundance from Arnan et el. (2011)",
      "object": "antsA",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sps_1",
        "sps_2",
        "sps_3",
        "sps_4",
        "sps_5",
        "sps_6",
        "sps_7",
        "sps_8",
        "sps_9",
        "sps_10",
        "sps_11",
        "sps_12",
        "sps_13",
        "sps_14",
        "sps_15",
        "sps_16",
        "sps_17",
        "sps_18",
        "sps_19",
        "sps_20",
        "sps_21",
        "sps_22",
        "sps_23",
        "sps_24",
        "sps_25",
        "sps_26",
        "sps_27",
        "sps_28",
        "sps_29",
        "sps_30",
        "sps_31",
        "sps_32",
        "sps_33",
        "sps_34",
        "sps_35",
        "sps_36",
        "sps_37",
        "sps_38",
        "sps_39",
        "sps_40",
        "sps_41",
        "sps_42",
        "sps_43",
        "sps_44",
        "sps_45",
        "sps_46"
      ],
      "rows": 99,
      "table": true,
      "tojson": true
    },
    {
      "name": "Azov",
      "title": "Helminth communities of so-iuy mullets from the Sea of Azov",
      "object": "Azov",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sample",
        "Ssp1",
        "Nper",
        "Hspl",
        "Sspa",
        "Agal",
        "Sten",
        "Sobe",
        "Scep",
        "Lput",
        "Spap",
        "Sdim",
        "Smin",
        "Alon",
        "Clon",
        "Dipl",
        "Cont",
        "Gmug",
        "Gzhu",
        "Llle",
        "Lpil",
        "Lkao",
        "Dper",
        "Pbre",
        "Tcla",
        "Timb"
      ],
      "rows": 378,
      "table": true,
      "tojson": true
    },
    {
      "name": "Japan",
      "title": "Helminth communities of so-iuy mullets from the Japan Sea",
      "object": "Japan",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sample",
        "Ssp1",
        "Step",
        "Hsp1",
        "Hsp2",
        "Sove",
        "Pmug",
        "Pfle",
        "Lhsp",
        "Hbiv",
        "Hssp",
        "Nyam",
        "Ntyl",
        "Cumu",
        "Gmug",
        "Gzhu",
        "Llle",
        "Lpil",
        "Lkao",
        "Ltri",
        "Lmir",
        "Pbig"
      ],
      "rows": 192,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "antsA",
      "title": "Ant species abundance from Arnan et el. (2011)",
      "topics": [
        "antsA"
      ]
    },
    {
      "page": "AOplot",
      "title": "Abundance Occupancy Plot",
      "topics": [
        "AOplot"
      ]
    },
    {
      "page": "Azov",
      "title": "Helminth communities of so-iuy mullets from the Sea of Azov",
      "topics": [
        "Azov"
      ]
    },
    {
      "page": "fuzzyq",
      "title": "Fuzzy Quantification of Common and Rare Species in Ecological Communities",
      "topics": [
        "fuzzyq"
      ]
    },
    {
      "page": "fuzzyqBoot",
      "title": "Apply Fuzzy Quantification of Common and Rare Species to Bootstrap Replicates",
      "topics": [
        "fuzzyqBoot"
      ]
    },
    {
      "page": "fuzzyqCI",
      "title": "Compute Confidence Intervals of Clustering Metrics",
      "topics": [
        "fuzzyqCI"
      ]
    },
    {
      "page": "Japan",
      "title": "Helminth communities of so-iuy mullets from the Japan Sea",
      "topics": [
        "Japan"
      ]
    },
    {
      "page": "sortClus",
      "title": "Sort Species by fuzzyq Clustering",
      "topics": [
        "sortClus"
      ]
    }
  ],
  "_readme": "https://github.com/ligophorus/fuzzyq/raw/HEAD/README.md",
  "_rundeps": [
    "cluster"
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "fuzzyq",
  "_universes": [
    "ligophorus"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-17T06:35:58.000Z",
      "distro": "resolute",
      "commit": "7bd4276506d71bcd118995dfedce101e8b53ae3b",
      "fileid": "https://r2.ropensci.org/6ff48e7bf28c65b25dbc208a57003368d70774862ca53126ccf82c6a55e9857d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ligophorus/actions/runs/39010265969"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-17T06:36:05.000Z",
      "distro": "resolute",
      "commit": "7bd4276506d71bcd118995dfedce101e8b53ae3b",
      "fileid": "https://r2.ropensci.org/fc21b9b7b594a0603f9c47895270d7f2cb7a46bb5c667e13a34333be9b089987",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ligophorus/actions/runs/39010265969"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-17T06:38:34.000Z",
      "commit": "7bd4276506d71bcd118995dfedce101e8b53ae3b",
      "fileid": "https://r2.ropensci.org/7adbdfd58e38334f4ea45a80e5cf9f270f205c68b08a703e0a63eeb5d5b2c622",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ligophorus/actions/runs/39010265969"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-17T06:36:56.000Z",
      "commit": "7bd4276506d71bcd118995dfedce101e8b53ae3b",
      "fileid": "https://r2.ropensci.org/423a6586c80cc5540e18da07126fb32481cfb6e641394837617cbd51c0add2c3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ligophorus/actions/runs/39010265969"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-10-17T06:35:52.000Z",
      "commit": "7bd4276506d71bcd118995dfedce101e8b53ae3b",
      "fileid": "https://r2.ropensci.org/0b91892cb3009de31c37ed41037b00b21f0dd7cbbc6300e5799dd6ad974c6760",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ligophorus/actions/runs/39010265969"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-17T06:35:26.000Z",
      "commit": "7bd4276506d71bcd118995dfedce101e8b53ae3b",
      "fileid": "https://r2.ropensci.org/65fc86c8e28f24902d54f06955a85abe7d5d74003652e9bb9b0098b305f40ba5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ligophorus/actions/runs/39010265969"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-17T06:35:23.000Z",
      "commit": "7bd4276506d71bcd118995dfedce101e8b53ae3b",
      "fileid": "https://r2.ropensci.org/ad8ecd49e29c6dea6b8a72be2309073775def18333549927354424a26a65a756",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ligophorus/actions/runs/39010265969"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-17T06:35:41.000Z",
      "commit": "7bd4276506d71bcd118995dfedce101e8b53ae3b",
      "fileid": "https://r2.ropensci.org/75f0a46c4e24074aace26be38cd3dea8be3a9f31ce6ef131eb12a7814313fe64",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ligophorus/actions/runs/39010265969"
    }
  ]
}