Package: paco 0.5.0
paco: Procrustes Application to Cophylogenetic Analysis
Procrustes analyses to infer co-phylogenetic matching between pairs of phylogenetic trees.
Authors:
paco_0.5.0.tar.gz
paco_0.5.0.zip(r-4.7-any)paco_0.5.0.zip(r-4.6-any)paco_0.5.0.zip(r-4.5-any)
paco_0.5.0.tgz(r-4.6-any)paco_0.5.0.tgz(r-4.5-any)
paco_0.5.0.tar.gz(r-4.7-any)paco_0.5.0.tar.gz(r-4.6-any)
paco_0.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
paco/json (API)
| # Install 'paco' in R: |
| install.packages('paco', repos = c('https://ligophorus.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ligophorus/paco/issues
Datasets:
- gl_links - Gopher-lice interactions
- gophertree - Gopher phylogeny
- licetree - Lice phylogeny
Last updated from:1ffc27ab7a. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 102 | ||
| source / vignettes | OK | 244 | ||
| linux-release | OK | 105 | ||
| macos-release | OK | 155 | ||
| macos-oldrel | OK | 179 | ||
| windows-devel | OK | 70 | ||
| windows-release | OK | 59 | ||
| windows-oldrel | OK | 60 | ||
| wasm-release | OK | 73 |
Exports:add_pcoordPACopaco_linksprepare_paco_dataresiduals_paco
Dependencies:clusterlatticeMASSMatrixmgcvnlmepermuteplyrRcppvegan
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Principal Coordinates analysis of phylogenetic distance matrices | add_pcoord |
| Gopher-lice interactions | gl_links |
| Gopher phylogeny | gophertree |
| Lice phylogeny | licetree |
| Performs PACo analysis. | PACo |
| Contribution of individual links | paco_links |
| Prepares the data (distance matrices and association matrix) for PACo analysis | prepare_paco_data |
| Return Procrustes residuals from a paco object | residuals_paco |
