Package: paco 0.5.0
paco: Procrustes Application to Cophylogenetic Analysis
Procrustes analyses to infer co-phylogenetic matching between pairs of phylogenetic trees.
Authors:
paco_0.5.0.tar.gz
paco_0.5.0.zip(r-4.7)paco_0.5.0.zip(r-4.6)paco_0.5.0.zip(r-4.5)
paco_0.5.0.tgz(r-4.6-any)paco_0.5.0.tgz(r-4.5-any)
paco_0.5.0.tar.gz(r-4.7-any)paco_0.5.0.tar.gz(r-4.6-any)
paco_0.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
paco/json (API)
| # Install 'paco' in R: |
| install.packages('paco', repos = c('https://ligophorus.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- gl_links - Gopher-lice interactions
- gophertree - Gopher phylogeny
- licetree - Lice phylogeny
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:eec36fef8b. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 123 | ||
| source / vignettes | OK | 147 | ||
| linux-release-x86_64 | OK | 117 | ||
| macos-release-arm64 | OK | 123 | ||
| macos-oldrel-arm64 | OK | 123 | ||
| windows-devel | OK | 78 | ||
| windows-release | OK | 70 | ||
| windows-oldrel | OK | 69 | ||
| wasm-release | OK | 97 |
Exports:add_pcoordPACopaco_linksprepare_paco_dataresiduals_paco
Dependencies:clusterlatticeMASSMatrixmgcvnlmepermuteplyrRcppvegan
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Principal Coordinates analysis of phylogenetic distance matrices | add_pcoord |
| Gopher-lice interactions | gl_links |
| Gopher phylogeny | gophertree |
| Lice phylogeny | licetree |
| Performs PACo analysis. | PACo |
| Contribution of individual links | paco_links |
| Prepares the data (distance matrices and association matrix) for PACo analysis | prepare_paco_data |
| Return Procrustes residuals from a paco object | residuals_paco |
